NGS Assembly Course - Training
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NGS Assembly Course
Date: | 06.09.2012 9:00 - 06.09.2012 17:00 |
Location details: | - |
Language: | english-language |
lecturers: |
Panu Somervuo Metapopulation Research Group & DNA Sequencing and Genomics Lab University of Helsinki |
Price: | - |
Topics of this course are genome and transcriptome denovo assembly.
Course consists of lectures and hands on exercises. Used tools include Velvet, Trinity, Oases, SOAPdenovo, Minimo (AMOS).
Program
Preliminary program:
09:00 Introduction: genome projects, NGS data, denovo assembly methods
10:00 Coffee
10:15 Genome Assembly I (velvet)
12:15 Lunch
13:00 Genome Assembly II (SOAPdenovo)
14:00 Combining Assemblies (amos Minimo)
15:00 Coffee
15:15 RNA-Seq, Transcriptome Assembly (velvet+oases, Trinity)
16:30 Summary
17:00 End
Material for the exercises