Bioweek 2017 single cell rnaseq - Training
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Date: | 09.02.2018 9:00 - 09.02.2018 17:00 |
Location details: | The event is organised at the CSC Training Facilities located in the premises of CSC at Keilaranta 14, Espoo, Finland. The best way to reach us is by public transportation; more detailed travel tips are available. |
Language: | english-language |
lecturers: |
Maria Lehtivaara
Eija Korpelainen |
Price: |
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The fee covers all materials, lunches as well as morning and afternoon coffees. |
Payment can be made with electronic invoicing, credit card, or direct bank transfer. Note that for electronic invoicing you need the operator and e-invoicing address (OVT code) of your organization. Please also note that invoice reference is needed for electronic invoicing in your organization, so please have this available when registering.
Practicalities: event-support@csc.fi
We will learn to preprocess DropSeq data (from raw FASTQ data into a digital expression matrix) and how to do clustering analysis with Seurat tools (10X Genomics data used in the exercises).
The free and user-friendly Chipster software is used in the exercises, so no previous knowledge of Unix or R is required, and the course is thus suitable for everybody.
Bioweek
…is a weeks worth of courses assembled especially with bioscientists in mind. Participate in all of them, or just pick the ones you find most interesting!
6.2. Data visualisation using RStudio and ggplot
7.2. Computing intensive bioinformatics analysis on Taito
9:00-10:30 Introduction to Chipster, Introduction to single-cell RNA-seq, Drop-seq data preprocessing
10:30-10:45 Coffee break
10:45-12:15 Drop-seq data preprocessing (lectures & exercises)
12:15-13:00 Lunch break
13:00-14:30 Drop-seq data preprocessing, Clustering analysis with Seurat tools (lectures & exercises)
14:30 -14:45 Coffee break
14:45-16:30 Clustering analysis with Seurat tools (lectures & exercises)