CSC Winter School in Bioinformatics 2015 - Training
|Date:||20.01.2015 10:45 - 22.01.2015 17:00|
Kimmo Mattila Ari-Matti Saren
This course provides a tutorial-style introduction to the essential, practical computational tools for life science research, with a focus on the infrastructure provided by CSC. The topics will include, e.g., managing your datasets, running analysis on a grid or a computer cluster, Unix power use and cloud computing. The workshop is aimed for graduate students in the field, providing a comprehensive overview on the tools of the trade, without forgetting the important aspect of network building.
Each of the course days focuses to specific topic or topics and you can register just for specific days if you are not willing to register to all the dates.
Monday, January 19th: Overview to the services of CSC. Storing and moving large datasets.
Tuesday, January 20th: Using taito.csc.fi supercluster
Wednesday, January 21st: Other tools (FGI, Cloud computing, Chipster)
|Monday, January 19th||Tuesday, January 20th||Wednesday, January 21st|
Using Taito Cluster
|Using FGI and Pouta service|
|10.45-11.15||Registration & coffee||Coffee break||Coffee break|
Introduction of the participants; course intro; Bio@CSC
|Using Taito Cluster||Using FGI and Pouta service, cont'd|
Introduction to CSC's
|Advanced Unix Features: shell scripting, awk, sed, utilities for large ASCII file manipulation||Using FGI and Pouta service, cont'd|
Moving and storing data: IDA, SUI etc
|Advanced Unix Features cont'd||Using FGI and Pouta service, cont'd|
|14.45-15.15||Coffee break||Coffee break||Coffee break|
Moving and storing data cont'd
|Advanced Unix Features cont'd||Demo: Chipster|
Wrap-up & discussion
|Wrap-up & discussion||Wrap-up & discussion|