C is one of the most widely used programming languages of all time and it is still popular in many applications areas including high performance computing. This course will give the participants the basic knowledge on C programming language and its utilization in scientific applications.
This workshop will focus on the core steps involved in calling variants with the Broad's Genome Analysis Toolkit, using the "Best Practices" developed by the GATK team. You will learn why each step is essential to the variant discovery process, what are the operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset.
Nordforum is an informal collaboration initiative between organizations dealing with Student Information Systems in the four Nordic countries. In Nordforum seminar "Free Flow of Information in Education", September 20-21, 2017, we will discuss exciting, current topics relating to free flow of information and gain synergies and new insights by benchmarking with our Nordic neighbours.
The Fortran programming language is still - despite of its long history - one of the standard and most useful languages in scientific computing. Our course will give the participants the basic knowledge on the Fortran 95 programming language as well as some glimpses on the Fortran 2003/2008 standards and their new features.
This hands-on course introduces the participants to single-cell RNA-seq data analysis concepts and tools. It consists of two alternative days, please select based on your computational background EITHER 1) 28.9 Single cell RNA-seq data analysis with R (previous experience with R required), OR 2) 29.9 Single cell RNA-seq data analysis with Chipster (suitable for everybody)